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  • miRNA靶基因预测数据库


    Table 1. MicroRNA靶基因预测网站链接 
    Method Type of Method Ref Method Availability Data availability Resource
    Stark et. al Complementary (Stark et. al., 2003) Online search Yes http://www.russell.embl.de/miRNAs
    miRanda Complementary (John et al., 2004) Download Yes http://www.microrna.org
    miRanda 
    MiRBase
    Complementary (Enright et al., 2003) Online search Yes http://microrna.sanger.ac.uk
    miRWalk - - Online search Yes http://www.umm.uni-heidelberg.de/apps/zmf/mirwalk/index.html
    Target Scan Seed Complementary (Lewis et al., 2005) Online search Yes http://www.targetscan.org
    DIANA 
    microT
    Thermodynamics (Kirakidou et al., 2004) Download Yes http://diana.cslab.ece.ntua.gr/
    PicTar Thermodynamics (Krek et al., 2005) N/A Yes http://pictar.mdc-berlin.de/
    RNAHybrid Thermodynamics & Statistical model (Rehmsmeier et al., 2004) Download Yes http://bibiserv.techfak.uni-bielefeld.de/rnahybrid
    miRGen++ Baynesian Inference (Huang et al., 2007b) Mathlab Code Yes http://www.psi.toronto.edu/genmir
               
    MiRtaget2 Support Vector Machine (Wang and El Naqa, 2008) Online search Yes http://mirdb.org
    TarBase Experimentally Validated Targets (Sethupathy et al., 2006) N/A Yes http://diana.cslab.ece.ntua.gr/tarbase/




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